When Jack is closing in on Marwan in the offices, the same clip is shown twice of a man in a pink shirt emerging from a door behind Jack to his right.
When Marwan and Rafique enter the conference room, we hear the door close behind them, but when Rafique passes his card over the keypad to unlock the door, we see that the door is already unlocked and open (or as closed as possible without being shut).
Dr Sanford tells Erin that "We're just not equipped to handle a patient like Maya". CTU routinely handles terror suspects, some of whom need medical attention. One would expect the CTU clinic could handle Maya.