When McGee is swapping Abby's Caf-Pow drinks, Abby takes the new drink, however the next shot shows the drink is still in McGee's hand.
When Sacks is questioning DiNozzo about his activities on the night in question, he asks, "where were you Tuesday night between 0900 and 0300 the next morning?". However he is not referring to 9pm at night - shown when DiNozzo replies, "Worked til seven..", which therefore accounts for 0900 - 1900.
When Gibbs headslaps Tony through the jail bars, the bars move.
When Gibbs brings DiNozzo the pizza, he turns it on it's side (pizza would likely fall apart, let alone sticking to the top) and slips it through the bars INSTEAD of using the food slot not three feet away.
(at around 28 mins) When Lt Pam Kim is being interviewed by Agent Gibbs in the interrogation room, there is a camera visible through the mirror on the right hand side of the shot.